rs27210628 SNP Detail

Summary

• ID
  rs27210628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28588331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTTGAT CCTAGCAACT
  TGTGACATGA ACACGTCAGG GATGTCACAG AAGGGGATGT AACTAGCTAT CCAAAGTGAT
  TGGCCCCTGA CCACAGGCCT CTGCAGCCAA ATTAGAGTGG ATGAAAGGCC TGGATGCAGG
  CGCTGCTCTC TCTGGGGGAG AAGGGAGGGA AAGGTGATTA CCCCATAGGT TTGAGGCTTT
  R
  ATTGATTTGT ATTTTTCCAG GCTGCTAAAG AAGATTAGAT CGCAGTATGA AAAGCGCCTA
  GGGCTTAAAA TAAATGAGCG GAGACGAAAG CCACTTCAAA AATGTCCAGG AAGCACACTG
  AACCCCCCCC CCCCCAGTGC AAGCTGCAGT GTGGCTGCTG CTTTCTTTGT TGGGGAGGCC
  TCATCTTTGC TTCCCCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410155	NES08770311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210628					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410155	NES08770311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28588331 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	1845 bp upstream
Cpgi11391	CpG island 11391	1214 bp proximal
Rr553884	regulatory region 553884	within coordinates
Rr553885	regulatory region 553885	893 bp proximal
Rr553886	regulatory region 553886	1044 bp proximal
Rr553887	regulatory region 553887	1322 bp proximal
Spaca9	sperm acrosome associated 9	within coordinates
Tssr16968	transcription start site region 16968	533 bp upstream
Tssr16969	transcription start site region 16969	1468 bp upstream
Tssr16970	transcription start site region 16970	1832 bp upstream
Tssr16971	transcription start site region 16971	1836 bp upstream
Tssr23291	transcription start site region 23291	1317 bp downstream
Tssr23292	transcription start site region 23292	1342 bp downstream
Tssr23293	transcription start site region 23293	1409 bp downstream