rs27210629 SNP Detail

Summary

• ID
  rs27210629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28588236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTGCC CATCCTCAGG
  GCTTCCAGGT TCTCCAAGGA AGCCATGCTA ACTGGCTTGC TGTGCCCCAC GAGCTCCCTA
  GAGCAAACCT GACTTAGTTC TTGATCCTAG CAACTTGTGA CATGAACACG TCAGGGATGT
  CACAGAAGGG GATGTAACTA GCTATCCAAA GTGATTGGCC CCTGACCACA GGCCTCTGCA
  R
  CCAAATTAGA GTGGATGAAA GGCCTGGATG CAGGCGCTGC TCTCTCTGGG GGAGAAGGGA
  GGGAAAGGTG ATTACCCCAT AGGTTTGAGG CTTTAATTGA TTTGTATTTT TCCAGGCTGC
  TAAAGAAGAT TAGATCGCAG TATGAAAAGC GCCTAGGGCT TAAAATAAAT GAGCGGAGAC
  GAAAGCCACT TCAAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410156	NES08770310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210629					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410156	NES08770310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28588236 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	1940 bp upstream
Cpgi11391	CpG island 11391	1309 bp proximal
Spaca9	sperm acrosome associated 9	within coordinates
Tssr16968	transcription start site region 16968	628 bp upstream
Tssr16969	transcription start site region 16969	1563 bp upstream
Tssr16970	transcription start site region 16970	1927 bp upstream
Tssr16971	transcription start site region 16971	1931 bp upstream
Tssr23291	transcription start site region 23291	1412 bp downstream
Tssr23292	transcription start site region 23292	1437 bp downstream
Tssr23293	transcription start site region 23293	1504 bp downstream