rs27210917 SNP Detail

Summary

• ID
  rs27210917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29239071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTGAAGT GAGCTTGTTT
  GACACAGCCC CCTTGATGGT GTTTATTTTA TGTCTTCTTT GTTTTGCTAA GCTTTGCCAT
  CTGTGAAGCA CTGTGCACAA ATCTGAAATG TGAAATGATA AATAATCATG ATTTATTCAG
  GTACTTGCTG CTTTGCCAAA TGGAGTGATC TGCATGTGGG TCCGAAAAAA ATCCTGAATG
  R
  GAGGCAGTGT TAGACTCTAC TGCAAGGTCC TAAACATCTT CTGCTGTGGA TGAATCAGAG
  TTGTTACATC CCAGTTTTTA GGGAACCTAC AGCTTCCTTT GCAAAGGAAC CTTATGCCCT
  TAGGTTTGTT TTGCCTCTGG AATGGCATGA GAGGGCTAAC CAGGGCTACA CAGAGAAACA
  AAATATAGCC GTCTCTTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37408147	NES08770453	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210917					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408147	NES08770453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29239071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	1707 bp distal
Gm13402	predicted gene 13402	783 bp downstream
Med27	mediator complex subunit 27	within coordinates