rs27210920 SNP Detail

Summary

• ID
  rs27210920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29238777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAACTTTAG TAATGTTGAT ATTTCTTTGA CTTATTAAAT
  GTACAGTAGT GCCAAGAAGG TGGCTGAAGA TTTGAGGTTG GATGCAGCAT GGGAGTGGTT
  M
  GCAGTGTCCT GCTGGCTGCT GGGAACTGGC TCCCCAGAAT TCGTGATTTC ACCGTTCGCC
  CACTTTCCCA AGTGTCTCCC TAGTTTTCTT GCTAGACTGA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37408150	NES08770445	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210920					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408150	NES08770445	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29238777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	1413 bp distal
Gm13402	predicted gene 13402	1077 bp downstream
Med27	mediator complex subunit 27	within coordinates
Rr396846	regulatory region 396846	1796 bp downstream
Tssr17001	transcription start site region 17001	1923 bp downstream