rs27210928 SNP Detail

Summary

• ID
  rs27210928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29237368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGTCACT TTCGCTCATC
  TCCCGGTCCT AGTCAGCCTC TCAGGGACTC CTTGTCTCCC GTCCCGTTAC CTAGTATTCA
  TTCTGTTGGC CATTTCGTCC TGGTTGTCAT CTGTGGTCCT CGGTTCCCGC TGTAGTGGTC
  CTATCTGATG AGGAAACCTC TTCTCAGGAA CTTCCACCTC GTCGATCTTA TCAGACCTTT
  Y
  CCTTGGGCTC CATCACATCG GGCCAGTCTC CCCATCAACA CTGTCCCAGG CCCAATTACG
  TACCTCTCGA TCCGATGAGC TCCAGTTCCC ATCCTCAGAG CCTAGAATTC ATCAGTTCCA
  CCTCACCTCA TTCTCAGACT ACCTCCGTTA CCTTTGCCTC TTTCCATTTC CCCTCCGAAG
  CCACCTGCTC CTCACTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37408158	NES08770638	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	T	T
ss146396478	ENSMUSSNP6339664	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210928					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408158	NES08770638	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29237368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	4 bp distal
Med27	mediator complex subunit 27	within coordinates
Rr396846	regulatory region 396846	387 bp downstream
Rr554013	regulatory region 554013	527 bp distal
Tssr17001	transcription start site region 17001	514 bp downstream