rs27210933 SNP Detail

Summary

• ID
  rs27210933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29236065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTACAAAT AAAAACCCTA
  ACTTGCAAGG ACTTAACATG AGGCAAATAG AACTTATTCT TTAATTACAA ACAGAAACTT
  TAGCCTGCAC AGGACAGAGG AACTTATTCT TAACTGTCTT AACTGCAAAC AGATCCCCTA
  AGCTGCAAGG TCTATTTTCC CTGTTTTGAT CTTCCATTAA CTTGAAAGGT ATATTGTCCA
  Y
  TTTGATGTCA CAGTATATAT CAATTTGTAT CATATATAAT CACATTTTGC TTATTTGCTT
  ATACGTTGGT AGATATCTGG CTCCTTTCAC ACTTGACTAT AGTGAATGAG GTTGCGGTGG
  ATATGGAAGT ACAAACATCT CATTTAGACA CTGCTTTCAA TTCTTTTGGA CACATACCAT
  AATTTCTATT ATTATTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37408163	NES08770686	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27210933					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408163	NES08770686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29236065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	570 bp proximal
Med27	mediator complex subunit 27	766 bp upstream
Rr396846	regulatory region 396846	615 bp upstream
Tssr17001	transcription start site region 17001	750 bp upstream