rs27210934 SNP Detail

Summary

• ID
  rs27210934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29236037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTCTAG TCCCAGGAAC
  TTATTCTTAA TTACAAATAA AAACCCTAAC TTGCAAGGAC TTAACATGAG GCAAATAGAA
  CTTATTCTTT AATTACAAAC AGAAACTTTA GCCTGCACAG GACAGAGGAA CTTATTCTTA
  ACTGTCTTAA CTGCAAACAG ATCCCCTAAG CTGCAAGGTC TATTTTCCCT GTTTTGATCT
  Y
  CCATTAACTT GAAAGGTATA TTGTCCATTT TGATGTCACA GTATATATCA ATTTGTATCA
  TATATAATCA CATTTTGCTT ATTTGCTTAT ACGTTGGTAG ATATCTGGCT CCTTTCACAC
  TTGACTATAG TGAATGAGGT TGCGGTGGAT ATGGAAGTAC AAACATCTCA TTTAGACACT
  GCTTTCAATT CTTTTGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
ss37408164	NES08770681	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	WSB/EiJ
rs27210934					SNP	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408164	NES08770681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29236037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	598 bp proximal
Med27	mediator complex subunit 27	794 bp upstream
Rr396846	regulatory region 396846	643 bp upstream
Tssr17001	transcription start site region 17001	778 bp upstream