rs27210935 SNP Detail

Summary

• ID
  rs27210935
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29235947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCAGAT GGTTGTGAGC
  CACCATGTGG TTGCTGGGAA TTGAACTTAG GACCTCTGAA AGAGCAGTCA GTGCTCTTAA
  TCGTTGAGCC ATCTCTCTAG TCCCAGGAAC TTATTCTTAA TTACAAATAA AAACCCTAAC
  TTGCAAGGAC TTAACATGAG GCAAATAGAA CTTATTCTTT AATTACAAAC AGAAACTTTA
  K
  CCTGCACAGG ACAGAGGAAC TTATTCTTAA CTGTCTTAAC TGCAAACAGA TCCCCTAAGC
  TGCAAGGTCT ATTTTCCCTG TTTTGATCTT CCATTAACTT GAAAGGTATA TTGTCCATTT
  TGATGTCACA GTATATATCA ATTTGTATCA TATATAATCA CATTTTGCTT ATTTGCTTAT
  ACGTTGGTAG ATATCTGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37408165	NES08770677	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27210935					SNP	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408165	NES08770677	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29235947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	688 bp proximal
Med27	mediator complex subunit 27	884 bp upstream
Rr396846	regulatory region 396846	733 bp upstream
Tssr17001	transcription start site region 17001	868 bp upstream