rs27210936 SNP Detail

Summary

• ID
  rs27210936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29235396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACAATTG TTGGGAATTG
  GGCTGCCGAC TGTAAGTCAT CAATAAATTC CTTCACTATC TAGAGACTGT CCATAAGTTC
  TGTGACTCTA GAGAACCCTG ACTAATACAC AGCCCCTTGA GGTCCTTTTT ATAGGAGAGT
  GCTCACACAG ACGACTGTTA GAAAGATGCA ATGAAAGGGA GGAACAAGGG GAGGGATGCT
  M
  ATCTAGTGAA TGTGGTCACG AGTTTAGTGT AGAGGTTGAA AACGTGTTTT GCAGCTTACC
  TAAAGAACAA GAACTTGGCA GGGCAGTGGT GGCACACGCC TTTAATCCCA GCACTTGGGA
  GGCAGAGGCA GGTGGATTTC TGAGTTCAAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG
  GCAGTCAGGG CTACACAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss37408167	NES08770711	PERLEGEN	MM_PANEL2	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs27210936					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37408167	NES08770711	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29235396 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11408	CpG island 11408	1239 bp proximal
Med27	mediator complex subunit 27	1435 bp upstream
Rr396846	regulatory region 396846	1284 bp upstream
Tssr17001	transcription start site region 17001	1419 bp upstream