rs27212816 SNP Detail

Summary

• ID
  rs27212816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27109169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAAGCC TGAAGGACCC
  CATGATATGA GGTCTCCCTC ATAAGGCCTC CTACCCTATG ACTCTGTTAC AACCAACCAG
  ATTACTGATG AGGTCATCCA TGGTTGTCAT CTGGGGAGGG ATTTCTTTGA AAATGGTTGC
  CTGGCTCCTC CCTCATCCCC ATCCTTGTCA CCCACAGCAG TGTGCCTGAT GGGGTAAGTG
  R
  TCATGTAGAT GACCCGTGGG CAGGTAGAGG AGTGGATGAG GTGAGTGGGA TGGGTCCCTA
  GGGTGAGTAG ATAGGTAGAA AAAAGCCTCA TAGAAAGGGA TGAAAGACAG ATGGTGGTAG
  AGGGGGTGAG CAGATGGGTA GAGCTGATGG AAGATTCACA AGAGCAAAAC CCAGCGCACG
  TGGGGCTGCT GGGCTGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37416248	NES08772600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27212816					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37416248	NES08772600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27109169 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr553492	regulatory region 553492			422 bp distal
Sardh	sarcosine dehydrogenase			Intron
				Noncoding-Transcript-Variant
Sardhos	sarcosine dehydrogenase, opposite strand			within coordinates