rs27212820 SNP Detail

Summary

• ID
  rs27212820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27108949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGCCAGT CCTCTGAGCA
  GGTCACATCT GTGCCAGTGT TGCTTCTCAT GATAACCTTA CCTTCAAAGG CAGGGACCAG
  GGGACTGGCC TGGGTGCCAG GAGCCAATCG GCTAACAGTC AGGTCGCTCT CAGTGCCTCC
  CCGTTGGTTC AGCATGCATG TGTACACTGT TGAGCCTGGC AACAAGGACC CAGATGTGAG
  Y
  TCCACCAAAG CTCGTCCCTC CTCAAAGCCT GAAGGACCCC ATGATATGAG GTCTCCCTCA
  TAAGGCCTCC TACCCTATGA CTCTGTTACA ACCAACCAGA TTACTGATGA GGTCATCCAT
  GGTTGTCATC TGGGGAGGGA TTTCTTTGAA AATGGTTGCC TGGCTCCTCC CTCATCCCCA
  TCCTTGTCAC CCACAGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37416252	NES08772596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27212820					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37416252	NES08772596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27108949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr553492	regulatory region 553492			202 bp distal
Sardh	sarcosine dehydrogenase			Intron
				Noncoding-Transcript-Variant
Sardhos	sarcosine dehydrogenase, opposite strand			within coordinates