rs27212839 SNP Detail

Summary

• ID
  rs27212839
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27106888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA TCACAAGCAG
  AAGGCTCCCT GTGAAGTTCC CAGAGGATGC TTGAATTTTG GACAGTGTCC TCAACACCAG
  GCCAAAGAAT CTCCTACCAT GACTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCATACTTC AGCTTACATT CTGTTATCAG
  S
  CTGAGTTCCC TACCAATTGT CAGTGATGTG CCTGCTTGCC CTGAGCAACC ATCCCCACTA
  GGCTGCTCTA TAGAGGCAAT GCAGGGAGTG CCCTAGACAT GGCAAAAGGC AGATCCACAT
  GAGCCAGGGG CAGAGGCTCA CCCCAGGCTC CTCTCTACCG TTTCCAGGTG TGCGATAAGC
  TTTGTAGGTG GCAGGTCTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37416271	NES08772609	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27212839					SNP	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37416271	NES08772609	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27106888 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr553491	regulatory region 553491			1004 bp distal
Rr553492	regulatory region 553492			997 bp proximal
Sardh	sarcosine dehydrogenase			Intron
				Noncoding-Transcript-Variant
Sardhos	sarcosine dehydrogenase, opposite strand			within coordinates
Tssr23196	transcription start site region 23196			1692 bp upstream