rs27212842 SNP Detail

Summary

• ID
  rs27212842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27106238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATCCAG ACTCCTCTCA
  GCGGTAATAA CACCCAGAAG AGTCTCCCTG AGCCATGGGT GGGCAGAGGC CTGCTTCCTC
  AAGTCTGACA CCTTTATTTT GGAGACACCT CACAGGAACA CACATATCCA TGGAAGGATG
  CAGTCTTGGG AGGCACACAG GCTCTGACCA GCCTGTCCTA CTACAATATC TGCTCATGTT
  Y
  TGAGTCTCTC CTTTCTCCCT TGTACAATGG GCCTGGTCCC AGCACAGGGA GCCTTCAGGG
  GCAAAATGCT ACCAGAGCAC CAGTCAGGGC CCACCAAAGC CTCACTCCCT TCCTCCTCTT
  AAGAAAGAGG CACTGGCCTC ATTAACCTTT TTAGTGGTGT GGATTTTATA CCATCTGTGT
  ATGTTTGCAA ATATTAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37416274	NES08772650	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27212842					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37416274	NES08772650	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27106238 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr553491	regulatory region 553491			354 bp distal
Rr553492	regulatory region 553492			1647 bp proximal
Sardh	sarcosine dehydrogenase			Intron
				Noncoding-Transcript-Variant
Sardhos	sarcosine dehydrogenase, opposite strand			within coordinates
Tssr23196	transcription start site region 23196			1042 bp upstream