rs27213404 SNP Detail

Summary

• ID
  rs27213404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24300740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGATCTTCC CATTGGCCTG
  TCTGCATTGC TCCCCAACAC CTTTGCCTCC AGCTCTTCTG GTTGCCTCAC TACCTAACTG
  GCTCACCCAC TCATCTGCTC TCCTCTCCTC CTCTAAAGAA AGGATGCTGC CTGATTTCAC
  AGCTTGATGA TGCCATGATT TCGGGGCCAG CATGGACCTC TTGCTCTCCT TCAGTGGACA
  Y
  ACTTTCTATC CATCCCATTG TCTTCCTGGC AGATGCCTTC CAGTGTCACC AACAGGACGA
  AAAGAACATC AAAGCCTTCC TTGAACTCTG ACTTCTCGTG GCTGACGTTG TTTTTCCAGC
  TGGCTGATAA ATGCCCAGGA TGGCTGGGCC TTACCACCTG CTTCTTCCTT GTTGAGGTCC
  CATTTCTACC TGCCTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37426223	NES08781498	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27213404					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426223	NES08781498	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24300740 () rs orientation: forward

Symbol	Name	Function Class
Psd4	pleckstrin and Sec7 domain containing 4	mRNA-UTR
Rr552870	regulatory region 552870	894 bp distal
Rr552871	regulatory region 552871	1341 bp distal
Rr552872	regulatory region 552872	1215 bp distal