rs27213406 SNP Detail

Summary

• ID
  rs27213406
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24299792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTCCCAC CTATGCGTTG TGTGGGCCTT GTCTAGGAAG
  AAGGGGATAA GGCAGAGGCT CCTAGTGATG ACTGTAGCTC CTGTAAGAGG GTCGTGTTGG
  M
  CTCCAGCCCG TCTATCTAAG GTAATGCAGT CCCTGGGACC TGGGATCACT GTATACAGGT
  GATACCTGAT ATAAACCTCT TCCTGGTTTC TTGGGTCTCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37426225	NES08781643	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27213406					SNP	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426225	NES08781643	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24299792 () rs orientation: forward

Symbol	Name	Function Class
Psd4	pleckstrin and Sec7 domain containing 4	mRNA-UTR
Rr552869	regulatory region 552869	1089 bp distal
Rr552870	regulatory region 552870	within coordinates
Rr552871	regulatory region 552871	393 bp distal
Rr552872	regulatory region 552872	267 bp distal