rs27213407 SNP Detail

Summary

• ID
  rs27213407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24297703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCGGAAT TTGTCCCCCA
  TGCACTCTCT CCTCTGAAAC ACGGGGCCTG GGTTGCTGGG AGGTCGCTTG AGGAAGTCTA
  GCTAGGACTG TTCACTGGGA ACAGTCTTAC TTTGGGAATT AGGTGACCTA GCAGGAGATG
  GTCCCAGAAG CATAGGGAAG GACCTCTTGG GAATTCCTAA GCACCATCTT GTAAGCAGGG
  Y
  TACTCTGGCA CTGCCCAGTA GAGGACAGCT TCTAACAAGA GTCCTTGGTA AGTTCAGGAC
  TCAGGGATGC TGTGGGGCTC CAAGCTTCAG ATCTTCTGAC TGCTTTATCC TACAACCAGC
  CAAACAAAGC CCTTCCCGGG ACAGGGAGTA CATGAAAAGG CTGCGTGCCT AATTGTTGTT
  AATCAACAGA GCAGAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37426226	NES08781642	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27213407					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37426226	NES08781642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24297703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11281	CpG island 11281	1792 bp distal
Psd4	pleckstrin and Sec7 domain containing 4	mRNA-UTR
Rr552868	regulatory region 552868	1782 bp distal
Rr552869	regulatory region 552869	within coordinates
Rr552870	regulatory region 552870	1377 bp proximal
Rr552871	regulatory region 552871	1675 bp proximal
Rr552872	regulatory region 552872	1801 bp proximal