rs27215564 SNP Detail

Summary

• ID
  rs27215564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24779421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGAAGA GAGCCTAAAT
  GTGGCACTGT CCACAATGGG ATAGTGTCGG AACACAGTCC AAAGAATGGA GTCATACGAA
  GGAAATTCTG AGTGCTTGTG AGAAAGTGCC AAAGAAACAA AGACAAGAAT CTTGTGACCT
  CAATTTCTTC AAAAAACCCA GAACTGTTCT TGGAATGTGC TTTCATGCCT TTCCCAGTTG
  Y
  AGCAGATAGG AGTGAGTTAC TTTAAATTAT TCATTATTAT TATTTGTTTG TATGCCTCTG
  TTGGGAAACC CTGCTACTTA AGATCAAAGT CTATCATGTC AGGATAGCTC CTCTGAGCTC
  TGCACAAAAA TGGAGGTCTC ACTTCTCCAG TGCAGATTCC CCTTTTCTGA CCTATCTGGG
  AAGCCCGACC CCCACACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37424290	NES08777048	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27215564					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37424290	NES08777048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24779421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehmt1	euchromatic histone methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Gm37139	predicted gene, 37139			39 bp downstream
Rr552926	regulatory region 552926			313 bp distal
Rr552927	regulatory region 552927			1117 bp proximal