rs27215567 SNP Detail

Summary

• ID
  rs27215567
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24779244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGAGGGAT TTTCTAGGTT AGGTTAATTG AGGTGGTGTG
  ACAGCTCTAA TTGTCAACTA GACACAATCT AGAATCACCA GAGAAGAGAG CCTAAATGTG
  S
  CACTGTCCAC AATGGGATAG TGTCGGAACA CAGTCCAAAG AATGGAGTCA TACGAAGGAA
  ATTCTGAGTG CTTGTGAGAA AGTGCCAAAG AAACAAAGAC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37424293	NES08777045	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27215567					SNP	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37424293	NES08777045	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24779244 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehmt1	euchromatic histone methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Gm37139	predicted gene, 37139			216 bp downstream
Rr552926	regulatory region 552926			136 bp distal
Rr552927	regulatory region 552927			1294 bp proximal