rs27216083 SNP Detail

Summary

• ID
  rs27216083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26199915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTTTTC ACAGTGGCAC
  AACCTAACAT TTCCAACATT CCAGCCAAAA CGTCAATGGG GCCAGGGGGA GAATGCCTGG
  CCATTCTCAT GCCCCAGCTG AAACGAGATC CCAGCTGTGG TACTCATGCT AAATTCAGGA
  ATCTGGTTCC GCACAGCTTA GGGACGGCGG AAACAATTTT TTCTACATTC CATACAGGAC
  R
  CTGTCCAATC AGAAAAGAGA CTGGCTCTGA ACTCAGGCAG TGTTTGTATG TCAGCCCTAG
  GCTGGAAGCT GCTGTCGTCT GGAATGCACA ATTCTGCCTC CATAGAAGCA AGTGGAGCCA
  GCTTCAGATC CACCGTCAGC GCCTGGCTGG GCAGCCACAG CAGGCGCCCA CAGGAAGTGC
  ACAAGACTGC CCTATTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37419212	NES08767698	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216083					SNP	G	G	G	A	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37419212	NES08767698	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26199915 () rs orientation: forward

Symbol	Name	Function Class
Rr372940	regulatory region 372940	990 bp downstream
Rr553269	regulatory region 553269	within coordinates
Rr553270	regulatory region 553270	1811 bp proximal