rs27216086 SNP Detail

Summary

• ID
  rs27216086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26199628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTTCCT TGTGTAGACA
  GAATTTTTCC AGGATCCTGG TTAAAAGACT CTTGCCTGGT AGCTCCAGAG GTGGCAAGTT
  CCCTGCGGTT TTTCCATCAA ATGGAGCAGC TGTTCCAGAG AAGGAAGTAA CCCCTGAGCC
  TACAGGTGGG GGTCTACGGA TGCGGGGTGG GGGTTGGGGG GCTTCAGGGT GTGAATAGCT
  R
  AAGTGGGCTT GTCCCTTTCT CTGGCAGACA GATTACATTA GTGTGGCCTA CTTTCTTCCC
  AGTACCACCG ATCCTGAAGA TACCCAGCCT GTTTTCACAG TGGCACAACC TAACATTTCC
  AACATTCCAG CCAAAACGTC AATGGGGCCA GGGGGAGAAT GCCTGGCCAT TCTCATGCCC
  CAGCTGAAAC GAGATCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37419215	NES08767695	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216086					SNP	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37419215	NES08767695	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26199628 () rs orientation: forward

Symbol	Name	Function Class
Rr372940	regulatory region 372940	703 bp downstream
Rr553269	regulatory region 553269	within coordinates