rs27216095 SNP Detail

Summary

• ID
  rs27216095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26199095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCTTC GAGAGCAGGC
  TGAAAGAGAG CAGACAGGGG GCCACTGTGA AAGACCAGCC AGAAACTGGT CACCAGGCCT
  TGGGGTTGGG AGAAAAGAAT GAGAAAAGAG ACCCTCTGAA GGCGAGATAG AGAACAAGTC
  CTTTTTCCTG AGGTTGGCTA GTCAGACAGA CATTGCACGG GGACTTCACA AAGCATGTGC
  Y
  GCCACTGAGG AATGTCCTGT CGCACATGAC TAGGGACCAG TGTCCACAGC CAGTAGCACA
  TTGAGGCTTG AGTTTTGGAG CTTCAGGGGG ATGTAAGGGA CATCCCAGCT ATGTCCTGAA
  AACCTTGTCT CTTCATCTCC TGCATCCTGG ATCCCTACCT CTCTGCAGCC TGACTGTCCT
  GCTCAGAGTC CTTCAGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37419224	NES08767681	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216095					SNP	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37419224	NES08767681	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26199095 () rs orientation: forward

Symbol	Name	Function Class
Rr372940	regulatory region 372940	170 bp downstream
Rr553269	regulatory region 553269	354 bp proximal