rs27216295 SNP Detail

Summary

• ID
  rs27216295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30718766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTCTCTA AGGAAAGGCT
  GCAACCACCT CAGTTTCTCC ACTGTGTAGA CCAAGTGGCG TAATGAGGAT CTTGCACCCC
  AACTCTTCCC CACAGACGCT GGGGGCAGTT CCTTATTCTC TGTCCCTTGA CGCCTAGCCA
  AACAGGCTGC CCACTTTTCC CACTTTTCAC TGGAGGGACT CTGTGAACCT TCATGTCCTG
  R
  TCTGGAAAAT TGGCATAATA TCACTTGCCT AGACCCTGAG CAGGAGGAAG CTTTGACATA
  GCAGAAAGGA CTGTACCAGG TAGCGTCCCC CTACGCAAAT TTGAGTGGCT GCAACTTTGA
  GTCCTGCGGC AAGGCCCTGA TGACTCTAAA AAGGTCAGTT ATGGGGAGGT GTCAATGGTC
  CTGAGGCTGC ACCATCATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss37404122	NES08755152	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs27216295					SNP	A	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404122	NES08755152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30718766 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	454 bp upstream
Cpgi11456	CpG island 11456	104 bp distal
Rr42629	regulatory region 42629	35 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	251 bp downstream
Tssr23394	transcription start site region 23394	560 bp upstream
Tssr23395	transcription start site region 23395	535 bp upstream
Tssr23396	transcription start site region 23396	443 bp upstream