rs27216296 SNP Detail

Summary

• ID
  rs27216296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30718596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCATCAC TGTCCGGCTC
  CGCCCCGCAC TGAAATTCCC CGCGAGGCCG CTGAAGGGCG TCTGAGCTCC GACGGGGCAT
  GCGGCCCCGC TACTGACTGG CTCCAATCCG AGGTGACACA GGCCCTATTC GGAGCCTGAA
  CACTACTTTC TGCAGCCTAC TTGACTTTGG CCACTCTCTA AGGAAAGGCT GCAACCACCT
  Y
  AGTTTCTCCA CTGTGTAGAC CAAGTGGCGT AATGAGGATC TTGCACCCCA ACTCTTCCCC
  ACAGACGCTG GGGGCAGTTC CTTATTCTCT GTCCCTTGAC GCCTAGCCAA ACAGGCTGCC
  CACTTTTCCC ACTTTTCACT GGAGGGACTC TGTGAACCTT CATGTCCTGA TCTGGAAAAT
  TGGCATAATA TCACTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37404123	NES08755150	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27216296					SNP	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404123	NES08755150	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30718596 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	284 bp upstream
Cpgi11456	CpG island 11456	within coordinates
Rr42629	regulatory region 42629	205 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	81 bp downstream
Tssr23394	transcription start site region 23394	390 bp upstream
Tssr23395	transcription start site region 23395	365 bp upstream
Tssr23396	transcription start site region 23396	273 bp upstream