rs27216297 SNP Detail

Summary

• ID
  rs27216297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30718217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGC ATGGCGTCGG CCGCGTGTTC
  Y
  GACACCCACA GGCCACCACC TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37404124	NES08755149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27216297					SNP	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404124	NES08755149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30718217 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	within coordinates
Cpgi11456	CpG island 11456	within coordinates
Rr42629	regulatory region 42629	584 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	within coordinates
Tssr23394	transcription start site region 23394	11 bp upstream
Tssr23395	transcription start site region 23395	within coordinates
Tssr23396	transcription start site region 23396	23 bp downstream