rs27216298 SNP Detail

Summary

• ID
  rs27216298
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30718078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGAGG CTCTCGGAGA
  GGCCTGCTGT CTGCCGAAAG TCCGGTCGGC CCCAGCCAGG ACGTCTCCAG CATCCATGCA
  CAGGCAGCAG AGGCCCGGGT CTTCTGCCCT ACAAGACACT CCGAGCCCGC CTCAGGCTGG
  AGCTCGAGCT CGCGGCCACG CAGCTCCCAC TCCCGCTGCG ACAACCACAG AGGACCGCAG
  M
  GACTTACTCA TCCAGGGGCT CCTGCCGCTC CAGATCCTGG ATGCCCAGGG CGCCAAGGAT
  GGCGTCCACT AGGGGCTGGT ACTCAAAGAT GATCCTGCGG AAGCCGTGCA AGAACGGCAT
  GGCGTCGGCC GCGTGTTCCG ACACCCACAG GCCACCACCT CCCGATCTAC CGGTTCAGAC
  CCCGCGCCGG TGAGCAATCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37404125	NES08755148	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27216298					SNP	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404125	NES08755148	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30718078 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	within coordinates
Cpgi11456	CpG island 11456	within coordinates
Rr42629	regulatory region 42629	723 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	137 bp upstream
Tssr23394	transcription start site region 23394	116 bp downstream
Tssr23395	transcription start site region 23395	135 bp downstream
Tssr23396	transcription start site region 23396	162 bp downstream