rs27216300 SNP Detail

Summary

• ID
  rs27216300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30717912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTGGTG AGACTGCTAG
  CTCCTCTGCC CCACCCTACT CTGCATCTCA GACCGCGATG CCGGTCTGGG TGCTCGCTTG
  TCTCTGTAGC ACAAGCACTC CGAAGGCGTA GCGCTCCGAG TACCCAAGGA GGTCTGCACA
  GGGCACACGG ACCACACCGG CTTGCTTCCC CAGAGGCTCT CGGAGAGGCC TGCTGTCTGC
  S
  GAAAGTCCGG TCGGCCCCAG CCAGGACGTC TCCAGCATCC ATGCACAGGC AGCAGAGGCC
  CGGGTCTTCT GCCCTACAAG ACACTCCGAG CCCGCCTCAG GCTGGAGCTC GAGCTCGCGG
  CCACGCAGCT CCCACTCCCG CTGCGACAAC CACAGAGGAC CGCAGCGACT TACTCATCCA
  GGGGCTCCTG CCGCTCCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37404127	NES08755146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27216300					SNP	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404127	NES08755146	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30717912 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	within coordinates
Cpgi11456	CpG island 11456	within coordinates
Rr42629	regulatory region 42629	889 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	303 bp upstream
Tssr23394	transcription start site region 23394	282 bp downstream
Tssr23395	transcription start site region 23395	301 bp downstream
Tssr23396	transcription start site region 23396	328 bp downstream