rs27216303 SNP Detail

Summary

• ID
  rs27216303
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30717473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CGACGCGCCT TACTTGCTCT
  W
  CGCCCTAATC TCACCCACCA GACCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37404130	NES08755143	PERLEGEN	MM_PANEL2	f	SNP		A		A		T	T
ss45337400	mCV23578223	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss146399429	ENSMUSSNP6517484	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss320221222	CHEV_2_30682981	CHEVERUD	SCREENING_POP	f	SNP					A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27216303					SNP	T	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404130	NES08755143	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30717473 () rs orientation: forward

Symbol	Name	Function Class
Asb6	ankyrin repeat and SOCS box-containing 6	within coordinates
Cpgi11456	CpG island 11456	45 bp proximal
Rr42629	regulatory region 42629	1328 bp proximal
Rr56587	regulatory region 56587	within coordinates
Rr396874	regulatory region 396874	742 bp upstream
Tssr23394	transcription start site region 23394	721 bp downstream
Tssr23395	transcription start site region 23395	740 bp downstream
Tssr23396	transcription start site region 23396	767 bp downstream