rs27216437 SNP Detail

Summary

• ID
  rs27216437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30660179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTTCCC AGTAGTTCTA
  AGCTACACAG TTCCATGTTC CTATTCAAAT TGGCCTTAGT ATTCCCTTGG GACTGGTCTC
  TGACCCCAAT TTGGTGCTAT CCTTCAGCCC CCTGAACTCA CCATGGCGAT ATAAGTAGTG
  TAACAGCAGA GTTAACCTTC TTCTTGCCTG GAGGGAGAAC ACAGGCTGTC CTGTTCTCAG
  R
  GGACCCACGA TACCCAGGAC CAACAGCTCC TGCTTGTGCG TAGTAGCTGT TGCATGAAAA
  TATGCAGTGC TGGCAGGCCG ATGCACACCT GCATCCTCAT ATTCAGGAAG CAGAGGCAGG
  AGGCTCAAGT GTCAAGCTAG CCTGGGCTAC ATAGAAAGAC TTGTTTTAAT TCTACCACCC
  TCTGCCCTCC CCCATGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37404266	NES08756048	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216437					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404266	NES08756048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30660179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11452	CpG island 11452	978 bp proximal
Gm39783	predicted gene, 39783	1988 bp upstream
Rr554427	regulatory region 554427	648 bp distal
Rr554428	regulatory region 554428	756 bp distal
Rr554429	regulatory region 554429	783 bp proximal
Rr554430	regulatory region 554430	1519 bp proximal