rs27216439 SNP Detail

Summary

• ID
  rs27216439
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30659676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC AGACCTGCCC ATTTGATATA
  K
  TTACACCCAG GTCCTAGGGC TTGTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37404268	NES08756045	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T	G		G	T	T	T		G		T	T		G
ss45379838	mCV22966617	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					G		T
ss146399235	ENSMUSSNP4766662	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T					G
ss320221163	CHEV_2_30625184	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27216439					SNP	G	G	T	T	G	T	G	G	G	T	T	T	T	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404268	NES08756045	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30659676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11452	CpG island 11452	1481 bp proximal
Rr554427	regulatory region 554427	145 bp distal
Rr554428	regulatory region 554428	253 bp distal
Rr554429	regulatory region 554429	1286 bp proximal