rs27216440 SNP Detail

Summary

• ID
  rs27216440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30659191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTTTATC AGAATTCAAA
  AGAACCATCG TAGCCAGGTT TAGTGGCACA TATCTTTAAT CTCAGTACCA GGAAGCAGAG
  GCAGGTGGAT CTATGTGAGC TTCAGGACAG CCTCATCTAC ATAGTGAATT CCCTGTTTCA
  GAAAATCAAA GAAAGAAAGA CAGCCTGCCA ACCTCAGCAG CTCCTAAGAC AAGGCCAACG
  R
  AGGAGAGAGA AATCTCGTGC CTTCGGAGCC TGCATGGAGG TCAGCCACCT CCAAGGACCC
  ACACAGTGGC GATGAGAAAG AATGGAAAAG AGAAAGGACC AGGGAAATGG CAGTGCCAAG
  GCTCTAGCCA TCGTCTAAAA GAAAGATACG GGAGAGAAGA AAGAGGAAGT CATACCTCAG
  TCAGGACTCA GAGTGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
ss37404269	NES08756065	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	A
ss146399224	ENSMUSSNP5683738	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	WSB/EiJ
rs27216440					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404269	NES08756065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30659191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11452	CpG island 11452	1966 bp proximal
Rr554427	regulatory region 554427	149 bp proximal
Rr554428	regulatory region 554428	211 bp proximal
Rr554429	regulatory region 554429	1771 bp proximal