rs27216814 SNP Detail

Summary

• ID
  rs27216814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27407331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGGCTG AGGAATGTCT
  CAGTAGCTCT CCGTTAGAGG AGTACTAGCT CATTTCCCAG TCAGGTGGTG TGCTTTTCTG
  GATGCGTGCA GGTGATGGGC CCTCCTGTAA ACTGCAGTAA ACTGTTGCAG TTGCATACAT
  GTTCAGGCTG AGTCTGTCCA GCTGACTGGA ATAACTACTT TCCCTCAGAC CTGCAGCTTA
  Y
  CTGCTGTTGT TTGTGCTGCT CCCCCAGAGG TTTCTTTCAC ATGGGGGCAG TGACTACTCT
  GTTTTATTCT TGGAGCGCTT TCGGTAGTAC TTTGTGCACT GAGTCCCTGT GCTCTGTAAG
  CTCTAGGTAT TGTTAAAGGC ATGTTGCAGT TTATGAGGTC ACAGGGAGCC ACTGAGGAGG
  TGAGGCCACT GTGTTTCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415040	NES08764025	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216814					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415040	NES08764025	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27407331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1296 bp distal
Gm74607	predicted gene, 74607	1749 bp upstream
Rr42254	regulatory region 42254	870 bp proximal
Rr56501	regulatory region 56501	330 bp distal
Rr372951	regulatory region 372951	113 bp downstream
Wdr5	WD repeat domain 5	within coordinates