rs27216815 SNP Detail

Summary

• ID
  rs27216815
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27407315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTGCTC CTTACATTGA
  TGGCTGAGGA ATGTCTCAGT AGCTCTCCGT TAGAGGAGTA CTAGCTCATT TCCCAGTCAG
  GTGGTGTGCT TTTCTGGATG CGTGCAGGTG ATGGGCCCTC CTGTAAACTG CAGTAAACTG
  TTGCAGTTGC ATACATGTTC AGGCTGAGTC TGTCCAGCTG ACTGGAATAA CTACTTTCCC
  W
  CAGACCTGCA GCTTATCTGC TGTTGTTTGT GCTGCTCCCC CAGAGGTTTC TTTCACATGG
  GGGCAGTGAC TACTCTGTTT TATTCTTGGA GCGCTTTCGG TAGTACTTTG TGCACTGAGT
  CCCTGTGCTC TGTAAGCTCT AGGTATTGTT AAAGGCATGT TGCAGTTTAT GAGGTCACAG
  GGAGCCACTG AGGAGGTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415041	NES08764024	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216815					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415041	NES08764024	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27407315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1280 bp distal
Gm74607	predicted gene, 74607	1733 bp upstream
Rr42254	regulatory region 42254	886 bp proximal
Rr56501	regulatory region 56501	314 bp distal
Rr372951	regulatory region 372951	97 bp downstream
Wdr5	WD repeat domain 5	within coordinates