rs27216816 SNP Detail

Summary

• ID
  rs27216816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27407284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTTAAC CTCAAAGCCA
  GACTTTACAT TATGATTGCT CCTTACATTG ATGGCTGAGG AATGTCTCAG TAGCTCTCCG
  TTAGAGGAGT ACTAGCTCAT TTCCCAGTCA GGTGGTGTGC TTTTCTGGAT GCGTGCAGGT
  GATGGGCCCT CCTGTAAACT GCAGTAAACT GTTGCAGTTG CATACATGTT CAGGCTGAGT
  Y
  TGTCCAGCTG ACTGGAATAA CTACTTTCCC TCAGACCTGC AGCTTATCTG CTGTTGTTTG
  TGCTGCTCCC CCAGAGGTTT CTTTCACATG GGGGCAGTGA CTACTCTGTT TTATTCTTGG
  AGCGCTTTCG GTAGTACTTT GTGCACTGAG TCCCTGTGCT CTGTAAGCTC TAGGTATTGT
  TAAAGGCATG TTGCAGTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415042	NES08764023	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216816					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415042	NES08764023	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27407284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1249 bp distal
Gm74607	predicted gene, 74607	1702 bp upstream
Rr42254	regulatory region 42254	917 bp proximal
Rr56501	regulatory region 56501	283 bp distal
Rr372951	regulatory region 372951	66 bp downstream
Wdr5	WD repeat domain 5	within coordinates