rs27216818 SNP Detail

Summary

• ID
  rs27216818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27407193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTTCC TCTAGGATTG
  AAGACTTTGA GGCATTGTTC TCTTTTGGTG TCCTTTCATC TTAGTCTTAT GTGGGGGTCC
  ATGTGAGGTT TCAGGTTTAA CCTCAAAGCC AGACTTTACA TTATGATTGC TCCTTACATT
  GATGGCTGAG GAATGTCTCA GTAGCTCTCC GTTAGAGGAG TACTAGCTCA TTTCCCAGTC
  R
  GGTGGTGTGC TTTTCTGGAT GCGTGCAGGT GATGGGCCCT CCTGTAAACT GCAGTAAACT
  GTTGCAGTTG CATACATGTT CAGGCTGAGT CTGTCCAGCT GACTGGAATA ACTACTTTCC
  CTCAGACCTG CAGCTTATCT GCTGTTGTTT GTGCTGCTCC CCCAGAGGTT TCTTTCACAT
  GGGGGCAGTG ACTACTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415044	NES08764021	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216818					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415044	NES08764021	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27407193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1158 bp distal
Gm74607	predicted gene, 74607	1611 bp upstream
Rr42254	regulatory region 42254	1008 bp proximal
Rr56501	regulatory region 56501	192 bp distal
Rr372951	regulatory region 372951	within coordinates
Tssr16855	transcription start site region 16855	1964 bp downstream
Tssr16856	transcription start site region 16856	1952 bp downstream
Wdr5	WD repeat domain 5	within coordinates