rs27216820 SNP Detail

Summary

• ID
  rs27216820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27407125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGACCTT GATGGAGATG
  GCTGCAGGTA AAACAGCTTG GCTGCACCTG TGTGGTGCAT GGTGTTCCTG TTCTTTCCTC
  TAGGATTGAA GACTTTGAGG CATTGTTCTC TTTTGGTGTC CTTTCATCTT AGTCTTATGT
  GGGGGTCCAT GTGAGGTTTC AGGTTTAACC TCAAAGCCAG ACTTTACATT ATGATTGCTC
  Y
  TTACATTGAT GGCTGAGGAA TGTCTCAGTA GCTCTCCGTT AGAGGAGTAC TAGCTCATTT
  CCCAGTCAGG TGGTGTGCTT TTCTGGATGC GTGCAGGTGA TGGGCCCTCC TGTAAACTGC
  AGTAAACTGT TGCAGTTGCA TACATGTTCA GGCTGAGTCT GTCCAGCTGA CTGGAATAAC
  TACTTTCCCT CAGACCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415046	NES08764019	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216820					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415046	NES08764019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27407125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	1090 bp distal
Gm74607	predicted gene, 74607	1543 bp upstream
Rr42254	regulatory region 42254	1076 bp proximal
Rr56501	regulatory region 56501	124 bp distal
Rr372951	regulatory region 372951	within coordinates
Tssr16855	transcription start site region 16855	1896 bp downstream
Tssr16856	transcription start site region 16856	1884 bp downstream
Wdr5	WD repeat domain 5	within coordinates