rs27216822 SNP Detail

Summary

• ID
  rs27216822
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27406875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAACTCAT GGCCATAGTT
  GCATTAAGAA TAAGCACCAG GTCAGGCCTG GTAGTTGATT TATGCCTGTT ACACCAACCA
  TACCAAGCTT GAGACTGGTT TTTTAATACC AGTGCATAGC AAGACCCTGT CTCCAAAAAG
  CTAAAAGCAC CAAGCAGCTG GTATTTCCTG GGCACAAGAG CTTTGTTTGT GGAGAGGCCC
  S
  TGGGACCTAC CCTAGTCTGA TCCTTGCACC TGGGCTTGAG CTACAGCGGA TTTGACCTTG
  ATGGAGATGG CTGCAGGTAA AACAGCTTGG CTGCACCTGT GTGGTGCATG GTGTTCCTGT
  TCTTTCCTCT AGGATTGAAG ACTTTGAGGC ATTGTTCTCT TTTGGTGTCC TTTCATCTTA
  GTCTTATGTG GGGGTCCATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415048	NES08764016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216822					SNP	C	C	C	C	C	C	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415048	NES08764016	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27406875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11378	CpG island 11378	840 bp distal
Gm74603	predicted gene, 74603	1796 bp downstream
Gm74607	predicted gene, 74607	1293 bp upstream
Rr42254	regulatory region 42254	1326 bp proximal
Rr56501	regulatory region 56501	within coordinates
Rr372951	regulatory region 372951	within coordinates
Tssr16855	transcription start site region 16855	1646 bp downstream
Tssr16856	transcription start site region 16856	1634 bp downstream
Tssr23228	transcription start site region 23228	1774 bp upstream
Wdr5	WD repeat domain 5	within coordinates