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rs27216822 SNP Detail
Summary
  • ID
    rs27216822
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr2:27406875 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGAACTCAT GGCCATAGTT
    GCATTAAGAA TAAGCACCAG GTCAGGCCTG GTAGTTGATT TATGCCTGTT ACACCAACCA
    TACCAAGCTT GAGACTGGTT TTTTAATACC AGTGCATAGC AAGACCCTGT CTCCAAAAAG
    CTAAAAGCAC CAAGCAGCTG GTATTTCCTG GGCACAAGAG CTTTGTTTGT GGAGAGGCCC
    S
    TGGGACCTAC CCTAGTCTGA TCCTTGCACC TGGGCTTGAG CTACAGCGGA TTTGACCTTG
    ATGGAGATGG CTGCAGGTAA AACAGCTTGG CTGCACCTGT GTGGTGCATG GTGTTCCTGT
    TCTTTCCTCT AGGATTGAAG ACTTTGAGGC ATTGTTCTCT TTTGGTGTCC TTTCATCTTA
    GTCTTATGTG GGGGTCCATG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37415048 NES08764016 PERLEGEN MM_PANEL2 f SNP C C C C C C G C C C G G C G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27216822 SNP C C C C C C G C C C G G C G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37415048 NES08764016 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:27406875 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11378 CpG island 11378 840 bp distal
Gm74603 predicted gene, 74603 1796 bp downstream
Gm74607 predicted gene, 74607 1293 bp upstream
Rr42254 regulatory region 42254 1326 bp proximal
Rr56501 regulatory region 56501 within coordinates
Rr372951 regulatory region 372951 within coordinates
Tssr16855 transcription start site region 16855 1646 bp downstream
Tssr16856 transcription start site region 16856 1634 bp downstream
Tssr23228 transcription start site region 23228 1774 bp upstream
Wdr5 WD repeat domain 5 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory