GGGAACTCAT GGCCATAGTT GCATTAAGAA TAAGCACCAG GTCAGGCCTG GTAGTTGATT TATGCCTGTT ACACCAACCA TACCAAGCTT GAGACTGGTT TTTTAATACC AGTGCATAGC AAGACCCTGT CTCCAAAAAG CTAAAAGCAC CAAGCAGCTG GTATTTCCTG GGCACAAGAG CTTTGTTTGT GGAGAGGCCC S TGGGACCTAC CCTAGTCTGA TCCTTGCACC TGGGCTTGAG CTACAGCGGA TTTGACCTTG ATGGAGATGG CTGCAGGTAA AACAGCTTGG CTGCACCTGT GTGGTGCATG GTGTTCCTGT TCTTTCCTCT AGGATTGAAG ACTTTGAGGC ATTGTTCTCT TTTGGTGTCC TTTCATCTTA GTCTTATGTG GGGGTCCATG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37415048 | NES08764016 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | G | C | C | C | G | G | C | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27216822 | SNP | C | C | C | C | C | C | G | C | C | C | G | G | C | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37415048 | NES08764016 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr2:27406875 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11378 | CpG island 11378 | 840 bp distal | ||||||
Gm74603 | predicted gene, 74603 | 1796 bp downstream | ||||||
Gm74607 | predicted gene, 74607 | 1293 bp upstream | ||||||
Rr42254 | regulatory region 42254 | 1326 bp proximal | ||||||
Rr56501 | regulatory region 56501 | within coordinates | ||||||
Rr372951 | regulatory region 372951 | within coordinates | ||||||
Tssr16855 | transcription start site region 16855 | 1646 bp downstream | ||||||
Tssr16856 | transcription start site region 16856 | 1634 bp downstream | ||||||
Tssr23228 | transcription start site region 23228 | 1774 bp upstream | ||||||
Wdr5 | WD repeat domain 5 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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