rs27216898 SNP Detail

Summary

• ID
  rs27216898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27348625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAAGTTCC AGCTGCAACT
  GGAACTCCAC GCAACTGCAC AGCAGTGGCC AGGCAGAGTA AACCAAGGCC ACCAGCAGCT
  CTGGGACAAC GTGGTTCCTT CCCAGGGCTC TTTTCCTCAC TCCAGCCCTG CTGGACAGGC
  CCAGCTGCTT TCTTCACTTT TTACTCAAAC GAACACAGGT ATAAACACTT TTTAGGTGGC
  Y
  AGGTCTACCT GTCCCCATAC TCACTACTAT CTAGGACAAA AGGCTTCAAC TGGGAGATTC
  TGCTTCAGGC ACCATGATTC TTCAGCTGAA GCCACTGCCT TTGAAAGGAC GCCTGGATGA
  AATAAGCAAC TACCTGGGAG TCAGCAGAGA TTCCTTTAGG AAGAGCCAAG CTCAACTGCA
  TTATCATCTC CCAGGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37415126	NES08765507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27216898					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415126	NES08765507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27348625 () rs orientation: forward

Symbol	Name	Function Class
Brd3	bromodomain containing 3	within coordinates
Tssr23219	transcription start site region 23219	1608 bp upstream