rs27216996 SNP Detail

Summary

• ID
  rs27216996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27318956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATACCAGA GCTCTGCAGT
  GAACTGAGCA GACGAAACCC TGAGGTAGGA ACTGTCAACC CCAGCCACAT GTCTGGGATG
  TGGGAAGTGG GCCACCAACT AACCATGCAC GAGGCTTCAG AGAAGAATGC CCCTGGAAAG
  GGGTAGCAGG TCTCCTGGGA GCTCTTACGG GATAGGGGCA AGCATGGCTA TGGAGAGCCA
  R
  GCCTCGTCCA GAGGCAGTTC TACATCATAA CGGAACTAAA CATCTCTGTC TTCCCAGTCA
  TGAGCTGGTC AGCTACAGCG TATTCTTTTA TGGACTCTGA TGTTAACTCC CCACTTCTAA
  TTTGCCAGCA AGTTTCAGAT TCTGAGCACT GCCAGCTCTG CCACCACCAA GGTCTATGTT
  CCTCCCCTTG GGTTCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37415227	NES08766100	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216996					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415227	NES08766100	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27318956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	1403 bp distal
Rr553546	regulatory region 553546	1922 bp distal
Rr553548	regulatory region 553548	1421 bp distal
Rr553549	regulatory region 553549	636 bp distal
Tssr23216	transcription start site region 23216	1883 bp upstream
Vav2	vav 2 oncogene	1911 bp upstream