rs27216997 SNP Detail

Summary

• ID
  rs27216997
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27318886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGAAGT GTCCAAGAGA
  AGTGTACCTC CCCACTTTGG TCATGAGCAC CACTGAAAGC CACTTGTGCT GAATACCAGA
  GCTCTGCAGT GAACTGAGCA GACGAAACCC TGAGGTAGGA ACTGTCAACC CCAGCCACAT
  GTCTGGGATG TGGGAAGTGG GCCACCAACT AACCATGCAC GAGGCTTCAG AGAAGAATGC
  S
  CCTGGAAAGG GGTAGCAGGT CTCCTGGGAG CTCTTACGGG ATAGGGGCAA GCATGGCTAT
  GGAGAGCCAG GCCTCGTCCA GAGGCAGTTC TACATCATAA CGGAACTAAA CATCTCTGTC
  TTCCCAGTCA TGAGCTGGTC AGCTACAGCG TATTCTTTTA TGGACTCTGA TGTTAACTCC
  CCACTTCTAA TTTGCCAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37415228	NES08766099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216997					SNP	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415228	NES08766099	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27318886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	1333 bp distal
Rr553546	regulatory region 553546	1852 bp distal
Rr553548	regulatory region 553548	1351 bp distal
Rr553549	regulatory region 553549	566 bp distal
Tssr23216	transcription start site region 23216	1813 bp upstream
Vav2	vav 2 oncogene	1841 bp upstream