rs27216998 SNP Detail

Summary

• ID
  rs27216998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27318646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGCAC CAGCAGAACT
  CTCTGGTACC CAATTCCTTA TCTGGCTAGT GGGGACATCA CTCATCTCGG AAATAATAGA
  AAGGATGAAT GAAGAAAAGC TGGGTGGGAA GTATTCCAGG TGTCTGTTGT GCATGTGTAG
  GTCAGAGTTC ACGAGCTCAA AACAAACATG CGGAGGACTG GTAAAGGGGA TCTTTCTCCT
  Y
  ACCCATTCTC TCAGCCCAGA ACTGTTCACC AGGATTGCCC TCTGGAAGTG TCCAAGAGAA
  GTGTACCTCC CCACTTTGGT CATGAGCACC ACTGAAAGCC ACTTGTGCTG AATACCAGAG
  CTCTGCAGTG AACTGAGCAG ACGAAACCCT GAGGTAGGAA CTGTCAACCC CAGCCACATG
  TCTGGGATGT GGGAAGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37415229	NES08766098	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216998					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415229	NES08766098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27318646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	1093 bp distal
Rr553546	regulatory region 553546	1612 bp distal
Rr553547	regulatory region 553547	1822 bp distal
Rr553548	regulatory region 553548	1111 bp distal
Rr553549	regulatory region 553549	326 bp distal
Tssr23216	transcription start site region 23216	1573 bp upstream
Vav2	vav 2 oncogene	1601 bp upstream