rs27216999 SNP Detail

Summary

• ID
  rs27216999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27317690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCTTGA TTGTCTAGTG
  GGAGGTGCTG GAGAGATAGA CCGTGTTGTG TCCTGAGGAC ATTGTGACAG TGGGAGGGAC
  TTCAAAAGCA TAAATAACTG ATTTTTGTGA TTAAAATTAA TTTGCTCTGG ACAGTATCAG
  GAGCTGTGGG TTCTTGGTAA AGAAGAAGGG AACCCCACAA AGCCAAGTCT TCTATGAGAC
  Y
  GGTGTCATGA AAGGGAGCTA GAAGAGAGGA AAGTGACCAG TTTCCAAGAG CCGAGCTTTT
  GTGGGCGGTG TTCTGTCAGC CCCTGCCTCT CTCAGTTTAC CTGGGCCAGG GAAGGATGAC
  AGATCTGTCC CCTGCACCCA GGGAAGTCCC TCCCAGAAAG GCCTCTCTCT GCAGGAAGTC
  CCATCACCTG CCCCACCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37415231	NES08766096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27216999					SNP	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37415231	NES08766096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27317690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11368	CpG island 11368	137 bp distal
Rr553546	regulatory region 553546	656 bp distal
Rr553547	regulatory region 553547	866 bp distal
Rr553548	regulatory region 553548	155 bp distal
Rr553549	regulatory region 553549	609 bp proximal
Tssr23213	transcription start site region 23213	1143 bp upstream
Tssr23214	transcription start site region 23214	1115 bp upstream
Tssr23215	transcription start site region 23215	1065 bp upstream
Tssr23216	transcription start site region 23216	617 bp upstream
Vav2	vav 2 oncogene	645 bp upstream