rs27217088 SNP Detail

Summary

• ID
  rs27217088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139451824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAACTCT ATCCATAATT
  CTACAGTGAA AACGAGCGAG TATCCACACA AACCCTTGTT TCTCTCATCA TGGACTCATT
  TACAACTGTG CAGCAGCGAA ACGTGCTCAG CCTCACTCTG GTTTGCAGAA TTTCATAGAG
  GAAACCAGCT CCCTCACCAG CCACAGCTGG GGAGGATTAA GCAGGTGGAT TCATGCCTAA
  Y
  GAAGCCCAGC GTGTGTGAGT TTGAGCTATA AGGAATGTAT TAGCTTTCTG TTTCTGCATA
  ACAAATTGTC CTAAGTGGCC GCTTAAAACA ATGCCCCGTT TATTATCAGT TACCTTGGTG
  AGACTCTGAG CAGAGCCTCC CCAGGAGGCT AAAGTAAGAT GGCACCATCT ACCCTTTCCA
  GCAACTCAGG CTGCTCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37440714	NES08954752	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27217088					SNP	T	T	T	T	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37440714	NES08954752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139451824 () rs orientation: forward

Symbol	Name	Function Class
Rr566030	regulatory region 566030	within coordinates
Sptlc3	serine palmitoyltransferase, long chain base subunit 3	Intron