rs27217090 SNP Detail

Summary

• ID
  rs27217090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139451662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGTTGCGA TGTAACACAC ATAGAATCGC ATACTGTTTC
  AGTACAAATA GAGAAGCAAA GAAGAGAACT CTATCCATAA TTCTACAGTG AAAACGAGCG
  R
  GTATCCACAC AAACCCTTGT TTCTCTCATC ATGGACTCAT TTACAACTGT GCAGCAGCGA
  AACGTGCTCA GCCTCACTCT GGTTTGCAGA ATTTCATAGA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37440716	NES08954749	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27217090					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37440716	NES08954749	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139451662 () rs orientation: forward

Symbol	Name	Function Class
Rr566030	regulatory region 566030	within coordinates
Sptlc3	serine palmitoyltransferase, long chain base subunit 3	Intron