rs27217367 SNP Detail

Summary

• ID
  rs27217367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139287699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTAATA AATGCTGTTC
  TTTGACAATT TCATACATTC TGGTTACTTT CTCCCAACCC CTTATTTTCC TTCAGGGCCT
  GCCAGTCTGA CTCCTTCCAT ATAAATCCCT GCAACATTCA TTTGGTTTTT GTTCTGTCTA
  GTATCCAGTG GGGTTTTACT AGGAACTGCC TGTATAATCC TGGGTTTTGC AACTAATTGT
  Y
  AGAGATCTGT GGGCTCACTG GTGTGTATAA AACTGGGTGG TATCTATATT AGCTGCAAAT
  AGATCAGCAG GAAGTTGAAG GCCCCAAGCC TCTTCTTAGT CATACATGAC TTTTAATAAG
  ACCTGATTTG CATGGAATCA ATGCCAGTTG TCACACATAC TCTTGAATTC ATGATCTCTA
  TGGCTGTGCT GTGCTGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37440996	NES08957569	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	C		C	C	T	C
ss147661641	ENSMUSSNP5899221	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27217367					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37440996	NES08957569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139287699 () rs orientation: forward

Symbol	Name	Function Class
D2Mit339	DNA segment, Chr 2, Massachusetts Institute of Technology 339	1029 bp distal