rs27217940 SNP Detail

Summary

• ID
  rs27217940
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139898992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTAAAGA TTACTTTGGC
  CGGGCACTTG GGAAGCAGAG GCAGGCGAAT TTCTGAGTTT GAGGCCAGCC TGGTCTACAG
  AGTGAGTTCA AAGACAGCCA TGGCTACACA GAGAAACCCT GTCTCAAAAA TAAATAAATA
  AATAAATAAA TAAATAAATA AATAAAGATT ACTTTGGTTT TTACATACTG AACTAGCCAT
  W
  TGTATGTTGT GTATGTAAGG TAAAGGGAAA TAAGGAAGAC ATTGGAAGAA GTCTCATTGT
  AAAACTTTCC AAGCAGGGTG TAGAGAAGGC CTTCACTCCA TTAATAGCTA ACAGACTCCT
  CTGGCAGACA CAAGTGCAGT CCTCAGTGTT GTTCAAAGCA AGAAAAGGAA AATGTTATTT
  CCCTTTCTAT CCCACCTCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37439262	NES08963978	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27217940					SNP	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439262	NES08963978	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139898992 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1052 bp downstream
Tssr20477	transcription start site region 20477	1025 bp downstream
Tssr20478	transcription start site region 20478	1009 bp downstream