rs27217946 SNP Detail

Summary

• ID
  rs27217946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139896450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAAAT GAATTCTGCC
  CAAAAGTATA GGCCTGTCCT CAAAGCCATG CCTCCTCAGA AATGGTGGAT CCAGGAGGTA
  AAGCTTTAAT CTATGTGTCC TTGTGGTCCT CTTAAGTAGA CAGACCCTAG GATGAGACAG
  TACCAAAAAC TTAGGGTCAA TTAAGGGTTT ATCTGCCCAG CTCAGCAGCC CAACAGGAGT
  Y
  ATTTAAGCTA CTCAGTCTCT GGTCCTCAGG TTCTTCACTT ATAATACTGG GAAAATACAG
  GTTGGCAAAA TGATCTACCT CAAAATACAA TTCTTTTAAT TATTTTTACA TCCATTATTT
  ATTTTGTATA TGAGTAGATA TGTTCATGCA AGCACACACA GAAGCACACA TGTGTAGTGG
  TATCAAGTTA TCAGGAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37439268	NES08964139	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27217946					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439268	NES08964139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139896450 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1477 bp upstream
Tssr20477	transcription start site region 20477	1505 bp upstream
Tssr20478	transcription start site region 20478	1522 bp upstream