rs27217948 SNP Detail

Summary

• ID
  rs27217948
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139896123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGATGGGGG CCGGGGGGGA TTGAAAGAGA CAGACAGAAA
  AATTAAACTT CCTGTATTTT GTGTCTGACA ATCCCTCTGG AATAGGTTCC ATGGGACTTG
  M
  AAGTTGTCCA GTCTAAAAAT AGCCAAAGGT TAATGACCAG ACAAGATATG AGAAATAAGT
  CTTCTCTGGG TAAAGCTAAG AGGAGACTTG CTATCTTTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37439270	NES08964137	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		C	C		C
ss320528005	CHEV_2_139879939	CHEVERUD	SCREENING_POP	f	SNP								A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27217948					SNP	A	A	A	A	A	A	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439270	NES08964137	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139896123 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1804 bp upstream
Tssr20477	transcription start site region 20477	1832 bp upstream
Tssr20478	transcription start site region 20478	1849 bp upstream