rs27217953 SNP Detail

Summary

• ID
  rs27217953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139895971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTGAGT TTGACCCCCA
  GAACCCATGG AAAGATGGAA GGAGAGACCC ATCTCCACAG TGCTGGCCTC TGACCCCTAC
  ACACACACCA CAGCACAGGC ACCCACACAC ATTATATGCA CACACAATGA TAACGAATAA
  TTTCTAACAA TTAAATAAAA AGGCAAAGAC TGATGATATA CCTCTGTGAC CAGACAATCA
  Y
  CTAGTGTACA AAAGGCTCTG TAGCAAATCC CAGGAGAAAA ACAGGGTATG ACAGATGGGG
  GCCGGGGGGG ATTGAAAGAG ACAGACAGAA AAATTAAACT TCCTGTATTT TGTGTCTGAC
  AATCCCTCTG GAATAGGTTC CATGGGACTT GAAAGTTGTC CAGTCTAAAA ATAGCCAAAG
  GTTAATGACC AGACAAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37439275	NES08964132	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27217953					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37439275	NES08964132	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139895971 () rs orientation: forward

Symbol	Name	Function Class
Tasp1	taspase, threonine aspartase 1	within coordinates
Tssr20476	transcription start site region 20476	1956 bp upstream
Tssr20477	transcription start site region 20477	1984 bp upstream