rs27219293 SNP Detail

Summary

• ID
  rs27219293
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23938849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTAGG TTGCCGGTTA
  GTCCATTGAA AGAAATGACA TTTTTTGTTA CCTTGCTATT ATGCCCGGAA GCTTCTTATC
  CATGAATTCC TGCATGCACT GGTGTTCCGT GGAATTATTT AGAAACCTCC GAAAAGATTC
  TACGTATCTG CCTTGGTCAG AAAATAAGCT CCTCATGCAA GATGCCATAT TGGGTTCTCT
  R
  ATAAAAACAA GGAGGGAGCT ACGTTTAACT TCCTCTGCTC CGAGTTCCTT CTTTTCCCTC
  TTTCTCTCCC CTCCCCCACC AGTTTCCTTA ACCCCGCCGT CTCCCAAACC GCTCCAAATA
  AGCAAACAAT TAATACATGA ATAAGAGATA AACGACAGCA CTTAAATCTG CTTTGTATTT
  GACCAGCGCT GAAAACTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37427129	NES08789253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27219293					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37427129	NES08789253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23938849 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	within coordinates
Tssr22898	transcription start site region 22898	within coordinates
Tssr22899	transcription start site region 22899	20 bp downstream
Tssr22900	transcription start site region 22900	519 bp downstream
Tssr22901	transcription start site region 22901	552 bp downstream
Tssr22902	transcription start site region 22902	571 bp downstream