rs27219299 SNP Detail

Summary

• ID
  rs27219299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23938459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAAAGG AGGTGCATAG
  AATTAGTGCT TCTCAAATCG CATTCTGCAA TTACCTTTAT CTGATCCTAA GGAAAGAATA
  CCAGAATCTA TTTGGGACTG TTTAAATATA TATATAATTT GAAAGGAGCT TAGAAAAAAA
  TTCCAAGTTT AATGATTTGA ATCATTTTTC CAAATAAGGT TGGGCTTGTG CCTTTAAAGC
  Y
  GACAAATAGT TAACACAGCC TGTGCTGCCA GCTATGCAAA TCAGTCTCGG TGGTGTTTAT
  AGCACAAACA GATCTGCGTA AGCAAGGCCA GCCAGTTTAG GCAAGGCCAG GCAGCAGCGG
  CAGCAGCAGC AGGCAGCTGT GGTTGTCTAT GACTCTAATC CCAGGGCCTC CTCCACCTCT
  GCCTACCCTC TGGGCTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37427135	NES08789239	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27219299					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37427135	NES08789239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23938459 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	within coordinates
Tssr22898	transcription start site region 22898	381 bp downstream
Tssr22899	transcription start site region 22899	410 bp downstream
Tssr22900	transcription start site region 22900	909 bp downstream
Tssr22901	transcription start site region 22901	942 bp downstream
Tssr22902	transcription start site region 22902	961 bp downstream